Math 5120 Section 1, Spring 2008

Introduction to Mathematical Biology II

Syllabus
Homework
Other things

Homework

Assignment Date Assigned Date Due Download
1 Jan 8 Jan 15 pdftex
2 Jan 15 Jan 22 pdftex
3 Jan 22 Jan 29 pdftex
4 Jan 29 Feb 5 pdftex
5 Feb 5 Feb 12 pdftex
6 Feb 12 Feb 19 pdftex
7 Feb 19 Feb 26 pdftex
8 Feb 26 Mar 4 pdftex
9 Mar 4 Mar 11 pdftex
10 Mar 11 Mar 25 pdftex
11 Mar 25 Apr 1 pdftex
12 Apr 1 Apr 8 pdftex
13 Apr 8 Apr 15 pdftex

Other things

Sample paper summary

Assuming you are on one of the unix computers in one of the math labs (or any unix computer on which LaTeX2e is installed), do the following:

  1. Download these files into the same directory:
    sample.tex
    neuro.bib
    camk2.eps
  2. On the command line of a terminal, change into the directory where you saved these files and type 'latex2e sample'. This tells LaTeX2e to compile the code contained in sample.tex.
  3. To create the bibliography, type 'bibtex sample'. You should probably now run LaTeX2e again (repeat step 2), then run BibTeX again, and then run LaTeX2e again.
  4. Now type 'xdvi sample.dvi &'. The contents of sample.dvi are displayed.
  5. To convert this to pdf format, type 'dvipdf sample.dvi' then type ' acroread sample.pdf &'. A pdf version of the sample paper should appear in Acrobat Reader.
That's all there is to it. Take some time to look at sample.tex and neuro.bib to get a feel for what LaTeX and BibTeX code look like. Try changing the code some, rerun steps 2-4 above and see how this changes the output. This can be done in your favorite text editor.

LaTeX is notoriously difficult to learn, but you should be able to get by in this class by simply using sample.tex and neuro.bib as a template for your paper summaries and final project. One short coming of the sample.tex template is that I have not shown you how to enter mathematical expressions. If you want to learn more about LaTeX, including entering mathematical expressions, a number of good tutorials can be found on the web. A particularly good one is found here.

Phase plane/direction field software & Java applets

DFIELD and PPLANE


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