Math 6770
COMPUTATIONAL NEUROSCIENCE
Math 6770, Fall 2017

TH 12:25-1:45 (LCB 323)

Lecturer: Alla Borisyuk
Office: LCB 303, Phone: (801) 585-1639
E-Mail: borisyuk at math.utah.edu
If you would like to meet, email me or come by



This will be an interdiscplinary class, for students with a variety of backgrounds. Some experience in MATLAB, ODEs and probability will be beneficial. If you have any question or concerns about prerequisites or topics to be covered, please contact me. Besides attending lectures, students will be expected to do several (4-5) homework sets, read scientific papers and work on projects. Your grade will be based on your class partcipation(10%), homeworks(40%), and the project (50%).

The class material will be drawn from many different sources, including books and research papers. Here is a list of books that are a good reference, but none of them covers the exact course contents, and they are not required

Preliminary topics:

Week 1 – 4. Phase plane and bifurcation analysis of neuronal models. Working with Matlab, Xpp, and Auto.
Week 5. Dynamical systems approach to population models
Week 6. Reduced models (integrate-and-fire and its varieties, theta model), adaptation
Week 7. Noisy synaptic input, filtering and resonance properties of neurons.
Week 8/9. Different types of noise in neural systems, their contribution to spike correlations and population oscillations
Week 10. Phase response curves, synchronization
Week 11/12. Synaptic plasticity. Spike time dependent plasticity
Week 13/14. Case-studies/Applications. Unlearning synchronization (tinnitus), Tuning of sound localization system, Calcium-based model of synaptic plasticity
Week 12 on. Class project.

Homeworks
Lecture materials

Project timeline:
You are encouraged to work in pairs, especially with people whose background is different from yours.
Feel free to talk to me about your idea to discuss its feasibility before the dealdines.
November 17 - project proposal due
Meet with me at least once before December 1 to show me your progress!
December 7 - in class presenations
December 15 at noon - written resports are due