Mathematical Biology at the University of Utah

5th Annual Student Workshop: Abstracts



Calcium Dynamics
The concentration of free intracellular calcium is used by almost every cell type to control a wide variety of cellular processes, including movement, secretion, differentiation and gene expression. However, it's not a simple control process; in many cases the calcium concentration oscillates, and it is the frequency of the oscillation that appears to carry the signal.

In this first talk I'll give an overview of calcium dynamics, from both a physiological and mathematical point of view. I'll discuss how to model the various calcium pumps, channels and transporters, with detailed discussion of intracellular calcium channels such as the inositol trisphosphate and ryanodine receptors.

We'll use both simple ODE models as well as more complicated PDE models, and, time permitting, discuss such things as calcium microdomains, homogenisation, and stochastic models.

These calcium models form the basis of many other models in cell physiology, and will appear in various guises in my other talks in this series.



Saliva Secretion
If you don't secrete saliva properly you get something called, surprise, surprise, 'dry mouth'. It doesn't sound too nasty, but actually it is. You can't eat or talk properly, just for a start.

Saliva secretion is controlled by ion channels at the apical and basal ends of parotid acinar cells, which are a type of secretory epithelial cell. Much like other transporting epithelia, such as Na-transporting epithelia in the gut or kidney, these cells transport water by transporting Cl- ions through the cell and letting water follow by osmosis. However, the cells also have to control their cell volume at the same time, which is not necessarily easy to do.

I'll discuss a relatively simple model of water transport by parotid acinar cells, with brief digressions on other interesting models of water transport (such as uphill transport), and I'll show how the overall process is controlled by calcium. As usual, I'll present a lot of data, including stochastic single-channel data, and try to show how the models can answer important questions.



Airway Smooth Muscle
Airway smooth muscle has the honour of being the only known tissue whose only function is pathological; contraction of airway smooth muscle causes asthma, and, as far as we know, it doesn't do anything else. Therefore, a lot of people put a lot of effort into understanding how the contraction of airway smooth muscle is controlled.

In this talk I'll discuss older models of skeletal muscle contraction (the Huxley model) and show how these models have been adapted to model smooth muscle, and why (the Hai-Murphy model). I'll then show how these models can be used to study airway smooth muscle and what we can learn about the mechanics of airway contraction. I'll present a lot of data from various laboratories and discuss how we can use our models to try and understand what is happening in airway smooth muscle cells and in strips of smooth muscle.

Mathematically, we'll be using conservation equations coupled with ODEs and (possibly) PDEs. Calcium, of course, plays an important role and we'll show how muscle models interact with the calcium models discussed in Talk 1.



GnRH Neurons
This talk will be the first of two talks on neurons. GnRH neurons are in the hypothalamus, and control the release of gonadotropin from gonadotrophs in the pituitary. However, release of GnRH is controlled by an intricate combination of membrane ion channels, bursting electrical potential, intracellular calcium release, and feedback from the periphery.

I'll discuss models of bursting electrical activity in other neurosecretory cells and show how GnRH cells are different in some ways, similar in others. I'll discuss the differences between measurements in cell lines, such as GT1 cells, and measurements in vivo.

Finally, I'll present a preliminary model of a GnRH neuron that shows how the careful control of various membrane currents leads to electrical bursting.

Although there is a lot known about electrical bursting in other neurosecretory cells, such as pancreatic beta cells, or pituitary gonadotrophs, GnRH neurons are much less well understood. So this talk will show how results from a range of other cell types can be used to inform and direct studies in GnRH neurons.

Mathematically, the important tools are those of nonlinear dynamics and bifurcation theory and an important part of the talk will be to show how bursting electrical activity can be analysed using these tools.



Vertebrate Photoreceptors
My final talk is the second one on neurons; in it I shall look at models of a very particular kind of neuron, the vertebrate photoreceptor. This cell type typifies the property of adaptation (which is seen in many other physiological contexts); indeed, the mechanisms by which light adaptation occurs as a result of intracellular biochemistry is a fascinating example of how complicated nonlinear behaviour can result from relatively simple biochemical networks.

Vertebrate photoreceptors have the wonderful property that they respond principally to changes in light intensity, not to the intensity of the background light; this property is so important that it appears at many levels of the visual system, beginning at the level of the intracellular biochemical kinetics.

I shall present some relatively simple models of vertebrate photoreceptors, discussing the various ion channels and reactions that mediate light adaptation. I shall consider such questions as reproducible single-photon responses, the differences between rods and cones, and consider briefly the responses of the retina as a whole. If time permits I'll also discuss lateral inhibition and the Hartline-Ratliff equations, which strictly speaking, are more to do with the invertebrate retina, but no matter.



Past Student Workshops

2008

2007

2006

2005

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